Bioinformatics Practical Manual |
Contents
Exercise 1a FASTP | 3 |
Exercise 1d FASTY 1113 | 11 |
Chapter 2 BLAST and its variants 1837 | 18 |
Chapter 3 More variants of BLAST 3848 | 38 |
Chapter4 Analyzing DNA and 4956 | 49 |
Chapter5 Multiple Sequence 5765 | 57 |
Common terms and phrases
alignment form amino acid appear in alignment At5g01610 Arabidopsis thaliana Bioinformatics BLAST to run BLAST using google button BLAST Clustal Omega Copy the FASTA Descriptions Graphic Summary DNA sequence Download Manage FASTA format FASTA sequence FASTX FASTY Filter Results Graphic Summary Alignments hypothetical protein Input the query Maximum Parsimony Molecular Weight Multiple Sequence Alignment NCBI using google nucleotide sequence Number of Matches Output Visual Output Percent identity phylogenetic tree producing significant alignments protein database protein sequence Proteomes provide sequence similarity PSI-BLAST query box Query Coverage query sequence Result will appear Results for job run BLAST Search for BLAST Search for NCBI searching against protein Select the database Select the parameter sequence from NCBI sequence in query Sequence Manipulation Suite sequence of Arabidopsis sequence similarity searching Sequences producing significant SMS2 Solanum lycopersicum subject sequences Summary Table Tool Table Tool Output Tool Output Visual Traditional Results Web services Whole Genome Shotgun


